Configuration

• ⚙️ Advanced configuration
  • Set defaults
  • Automatic environment management
  • Snakemake profiles
  • Cluster execution
• 🛠️ Troubleshooting
  • Conda environment installation fails
  • Working with GPUs
  • Working with CPUs only
  • Working on Apple Silicon
  • FAQs
• 📥 Input file mapping principles
  • Input mapping formats
  • Output naming for multi-output rules
  • Practical recommendations