Label transfer

DATASETS:
  test:
    input:
      label_transfer:
        file_1: test/input/pbmc68k.h5ad
        file_2: test/input/pbmc68k.h5ad
    label_transfer:
      majority_reference:
        reference_key: bulk_labels
        query_key: louvain

• majority_reference: Majority voting to assign reference labels to query clusters.

  • reference_key: The key in the reference dataset that contains the labels to be transferred.

  • query_key: The key in the query dataset that contains the clusters that will be assigned.