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scAtlasTb

Usage

Getting started
Configuration

Modules

Data preparation
Integration
- Batch Integration
- Metrics
Downstream analysis
Helper modules
- Relabel Module
- Filter
- Subset data
- Split Data
- Merge
- Collect
- Uncollect

Tutorials

Data exploration and semi-automated quality control
Quantify batch effect
Integration pipeline
Metrics
Iterative clustering
Harmonizing cell type labels with CellHint

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Data preparation

Data preparation#

Data loading
Preprocessing
Label Harmonisation
Cell Type Prediction
Doublet Detection
Quality Control
Batch Analysis

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📥 Input file mapping principles

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Data loading

By Michaela Mueller

© Copyright 2026, Michaela Mueller..