Getting started

• 📦 Installation
  • Clone the repository
  • Requirements
  • Install dependencies
  • Option 1: env_mode: from_yaml
  • Option 2: env_mode: local
• 🚀 Quickstart
• 🔧 Configure Your Workflow
  • 1. Global configuration: Output settings
  • 2. Global configuration: Computational settings
  • 3. Input configuration
  • 4. Module configuration
• ▶️ Call the pipeline
  • Create a runner script
  • Call the Snakemake pipeline
  • First dry run
  • List all available rules
  • Specify which workflow/rule you want to run
  • Execute the workflow